Yeah but it's not going to throw it off THAT much, a few turns on the tierod and/or Drag link end(s) and a few measurements after the lift is complete will do it. Need to do that anyway to recenter the steering wheel.
The YJ has a fixed rod from tire to tire... therefor no change when lifted.
However the TJ uses a tie rod from the pitman arm to the passenger tire. Then it uses a drag link off of that. If you lift it, the tie, it pulls the drag closer.